| Title: | Epidemiological characteristics of the dengue time series |
|---|---|
| Description: | extracts epi-features from dengue datasets. |
| Authors: | Felipe Antonio Dzul Manzanilla [aut, cre] (ORCID: <https://orcid.org/0000-0002-2085-9141>), Cecilia Cruz López [aut] (ORCID: <https://orcid.org/0000-0002-9156-5669>), Emmanuel Morales García [aut] (ORCID: <https://orcid.org/0000-0002-6837-9227>), Fabian Correa-Morales [ctb, aut] (ORCID: <https://orcid.org/0000-0002-6193-1242>) |
| Maintainer: | The package maintainer <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.1.0 |
| Built: | 2026-10-25 16:40:55 UTC |
| Source: | https://github.com/fdzul/epifeatures |
Epidemiological characteristics with cases
ef_wc(x, dc_threshold, c_weeks, ef)ef_wc(x, dc_threshold, c_weeks, ef)
x |
where denotes the numerical vector of the number of cases per unit time. |
dc_threshold |
where is the threshold for the number of cases. |
c_weeks |
is the consecutive week. |
ef |
is the epifeature. The options are dc3, dc6, dcmax, dcmed, & dci. |
The function and arguments were based on the work of Almeida et al. (2022) for a more detailed review. Almeida IF, Lana RM, Codeco CT. 2022. How heterogeneous is the dengue transmission profile in Brazil? A study in six Brazilian states. PLO Neglected Tropical Diseases.
This function returns a vector numeric.
Felipe Antonio Dzul Manzanilla [email protected]
ef_wc(x = c(8, 15, 20, 0, 0, 0, 0, 5, 9 ,12), ef = "freq", dc_threshold = 5, c_weeks = 3)ef_wc(x = c(8, 15, 20, 0, 0, 0, 0, 5, 9 ,12), ef = "freq", dc_threshold = 5, c_weeks = 3)
Epidemiological characteristics without cases
ef_woc(x, dc_threshold, c_weeks, ef)ef_woc(x, dc_threshold, c_weeks, ef)
x |
where denotes the numerical vector of the number of cases per unit time. |
dc_threshold |
where is the threshold for the number of cases. |
c_weeks |
is the consecutive week. |
ef |
is the epifeature. The options are ds3, ds6,dsmax, & dsmed. |
The function and arguments were based on the work of Almeida et al. (2022) for a more detailed review. Almeida IF, Lana RM, Codeco CT. 2022. How heterogeneous is the dengue transmission profile in Brazil? A study in six Brazilian states. PLO Neglected Tropical Diseases.
This function returns a vector numeric.
Felipe Antonio Dzul Manzanilla [email protected]
ef_woc(x = c(2, 0, 0, 0, 3, 5, 0, 0, 0, 0,2), dc_threshold = 0, c_weeks = 3, ef = "ds3")ef_woc(x = c(2, 0, 0, 0, 3, 5, 0, 0, 0, 0,2), dc_threshold = 0, c_weeks = 3, ef = "ds3")