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denhotspots - Local Spatial Statistics and Space-Time Analysis of Dengue Hotspots

Tools to identify persistent dengue transmission hotspots in Mexico. Calculates the local spatial statistics Getis-Ord Gi* and local spatial heteroscedasticity (Hi), runs space-time analyses (Knox test, SaTScan, transmission chains) and fits spatial log-Gaussian Cox process models with INLA to map the intensity of dengue cases.

Last updated

3.78 score 1 stars 7 scripts

knox - Knox test

Knox test for space-time interaction

Last updated

cpp

1.70 score

denguedatasets - The denguedasets package provide a curated collection of open-access dengue fever surveillance and climate datasets for epidemiological research, data science and machine learning

The denguedasets package provide a curated collection of open-access dengue fever surveillance and climate datasets for epidemiological research and machine learning. Includes surveillance records, climatic co-variates, and mortality indicators from Bangladesh, the Philippines, Taiwan, Sri Lanka, Brazil, Colombia, Pakistan, India, Peru, Indonesia, and Sierra Leone, spanning case counts, deaths, case-fatality rates, and associated meteorological variables (temperature, humidity, precipitation) suitable for spatiotemporal analysis, outbreak prediction, machine learning, and time-series modeling from Kaggle.

Last updated

2.00 score

ppmData - Quasirandom quardature scheme using dirichlet tesselation for spatial Poisson point process models

This package generates a set of quasi-random points for a quadrature scheme, we calculate each points weights using a dirichlet tesselation (voronoi) algorithm. The resulting object can be used in existing single and multiple species models in order to extend them to Point Processes.

Last updated

cpp

3.94 score 4 stars 44 scripts

similiars - Matches Strings to Most Similiar String

Package to find similiarity between character vectors.

Last updated

3.29 score 39 stars 5 scripts